Notes and Attachments: Yes. Super Clone Pro can clone the Notes and Attachments related to standard or custom object. The binary data of the note and file is duplicated into a new Attachment record.
Enhanced Notes and Files: Super Clone Pro can clone the reference to an Enhanced Note and File. Salesforce stores Enhanced Notes and Files in the Content Document object, and the Content Document Link object that references the Content Document can be cloned. Both source record and new cloned record will point to the same Enhanced Note and File. The binary data of the file is not duplicated.